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LOC107984482 uncharacterized LOC107984482 [ Homo sapiens (human) ]

Gene ID: 107984482, updated on 17-Sep-2024

Summary

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Gene symbol
LOC107984482
Gene description
uncharacterized LOC107984482
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC107984482 in Genome Data Viewer
Location:
12p11.23
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (26322920..26332065, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (26195467..26205348, complement)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene sarcospan Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_26866 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:26379181-26379816 Neighboring gene ITPR2 and SSPN antisense RNA 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6118 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr12:26398995-26400194 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_26902 Neighboring gene uncharacterized LOC105369705 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6119 Neighboring gene uncharacterized LOC105369704 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6120 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6121 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6122 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6123 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr12:26512284-26513483 Neighboring gene RNA, 5S ribosomal pseudogene 354 Neighboring gene inositol 1,4,5-trisphosphate receptor type 2 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr12:26662897-26663668 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_26952 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_26967 Neighboring gene NANOG hESC enhancer GRCh37_chr12:26726101-26726602 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:26796645-26797336 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr12:26800684-26801883 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6125 Neighboring gene ReSE screen-validated silencer GRCh37_chr12:26881161-26881390 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6124 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4302 Neighboring gene H3K27ac hESC enhancer GRCh37_chr12:26896687-26897188 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6126 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6127 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:26937397-26938110 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr12:26939539-26940250 Neighboring gene uncharacterized LOC124902903

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    26322920..26332065 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001749054.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    26195467..26205348 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007083367.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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