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LOC107984462 uncharacterized LOC107984462 [ Homo sapiens (human) ]

Gene ID: 107984462, updated on 17-Jun-2024

Summary

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Gene symbol
LOC107984462
Gene description
uncharacterized LOC107984462
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC107984462 in Genome Data Viewer
Location:
12p11.22
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (28123001..28134574)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (27995089..28006664)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105369709 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr12:27974511-27975710 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6152 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_27196 Neighboring gene MPRA-validated peak1633 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6153 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr12:28058285-28059082 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr12:28059083-28059881 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:28121815-28122325 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:28122326-28122835 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:28128050-28128738 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:28128739-28129427 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_27213 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_27218 Neighboring gene MPRA-validated peak1634 silencer Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr12:28175972-28177171 Neighboring gene ReSE screen-validated silencer GRCh37_chr12:28180270-28180494 Neighboring gene parathyroid hormone like hormone Neighboring gene uncharacterized LOC105369710 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr12:28283226-28284425 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_27297 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_27323 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4315 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4316 Neighboring gene IFT57 pseudogene 1 Neighboring gene uncharacterized LOC729291 Neighboring gene coiled-coil domain containing 91

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    28123001..28134574
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001749450.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    27995089..28006664
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007083374.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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