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LOC107801701 nuclear transcription factor Y subunit C-9-like [ Nicotiana tabacum (common tobacco) ]

Gene ID: 107801701, updated on 28-Dec-2023

Summary

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Gene symbol
LOC107801701
Gene description
nuclear transcription factor Y subunit C-9-like
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Nicotiana tabacum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Also known as
CIP2b
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Genomic context

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See LOC107801701 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
100 current Ntab-TN90 (GCF_000715135.1) Unplaced Scaffold NW_015934514.1 (38106..42469, complement)

NW_015934514.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107801700

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015934514.1 Unplaced Scaffold Reference Ntab-TN90 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein heterodimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear transcription factor Y subunit C-9-like
Names
CONSTANS interacting protein 2b

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001325701.1 → NP_001312630.1  nuclear transcription factor Y subunit C-9-like

    Status: PROVISIONAL

    Source sequence(s)
    KJ767664
    UniProtKB/TrEMBL
    A0A076FU26
    Conserved Domains (1) summary
    COG5208
    Location:84 → 257
    HAP5; CCAAT-binding factor, subunit C [Transcription]

RefSeqs of Annotated Genomes: Nicotiana tabacum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ntab-TN90 Primary Assembly

Genomic

  1. NW_015934514.1 Reference Ntab-TN90 Primary Assembly

    Range
    38106..42469 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016625067.1 → XP_016480553.1  nuclear transcription factor Y subunit C-9-like isoform X1

    UniProtKB/TrEMBL
    A0A076FU26
    Conserved Domains (1) summary
    COG5208
    Location:84 → 257
    HAP5; CCAAT-binding factor, subunit C [Transcription]

  2. XM_016625066.1 → XP_016480552.1  nuclear transcription factor Y subunit C-9-like isoform X1

    UniProtKB/TrEMBL
    A0A076FU26
    Conserved Domains (1) summary
    COG5208
    Location:84 → 257
    HAP5; CCAAT-binding factor, subunit C [Transcription]

  3. XM_016625070.1 → XP_016480556.1  nuclear transcription factor Y subunit C-9-like isoform X2

    UniProtKB/TrEMBL
    A0A1S4AVF1
    Conserved Domains (1) summary
    COG5208
    Location:56 → 229
    HAP5; CCAAT-binding factor, subunit C [Transcription]

  4. XM_016625069.1 → XP_016480555.1  nuclear transcription factor Y subunit C-9-like isoform X2

    UniProtKB/TrEMBL
    A0A1S4AVF1
    Conserved Domains (1) summary
    COG5208
    Location:56 → 229
    HAP5; CCAAT-binding factor, subunit C [Transcription]
Nucleotide Protein
Heading Accession and Version

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