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LOC107785188 squamosa promoter-binding-like protein 12 [ Nicotiana tabacum (common tobacco) ]

Gene ID: 107785188, updated on 28-Dec-2023

Summary

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Gene symbol
LOC107785188
Gene description
squamosa promoter-binding-like protein 12
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Nicotiana tabacum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Also known as
SPL2; NtabSPL2
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Genomic context

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See LOC107785188 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
100 current Ntab-TN90 (GCF_000715135.1) Unplaced Scaffold NW_015911938.1 (33244..38750, complement)

NW_015911938.1Genomic Context describing neighboring genes Neighboring gene ranBP2-type zinc finger protein At1g67325-like Neighboring gene uncharacterized LOC107785186

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015911938.1 Unplaced Scaffold Reference Ntab-TN90 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The role of miR156 in developmental transitions in Nicotiana tabacum. Zhang T, et al. Sci China Life Sci, 2015 Mar. PMID 25682394
  2. Characterization and phylogenetic analysis of fifteen NtabSPL genes in Nicotiana tabacum L. cv. Qinyan95. Han YY, et al. Dev Genes Evol, 2016 Jan. PMID 26635304
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
squamosa promoter-binding-like protein 12
Names
SBP-box 2
squamosa promoter binding protein spl2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001325397.1 → NP_001312326.1  squamosa promoter-binding-like protein 12

    Status: PROVISIONAL

    Source sequence(s)
    LC072721
    UniProtKB/TrEMBL
    A0A0C5DEV8
    Conserved Domains (1) summary
    pfam03110
    Location:171 → 245
    SBP; SBP domain

RefSeqs of Annotated Genomes: Nicotiana tabacum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ntab-TN90 Primary Assembly

Genomic

  1. NW_015911938.1 Reference Ntab-TN90 Primary Assembly

    Range
    33244..38750 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016606428.1 → XP_016461914.1  squamosa promoter-binding-like protein 12

    UniProtKB/TrEMBL
    A0A0C5DEV8
    Conserved Domains (1) summary
    pfam03110
    Location:171 → 245
    SBP; SBP domain

  2. XM_016606427.1 → XP_016461913.1  squamosa promoter-binding-like protein 12

    UniProtKB/TrEMBL
    A0A0C5DEV8
    Conserved Domains (1) summary
    pfam03110
    Location:171 → 245
    SBP; SBP domain
Nucleotide Protein
Heading Accession and Version

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