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LOC107782996 histone deacetylase HDT1-like [ Nicotiana tabacum (common tobacco) ]

Gene ID: 107782996, updated on 2-Jun-2019

Summary

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Gene symbol
LOC107782996
Gene description
histone deacetylase HDT1-like
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Nicotiana tabacum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Also known as
HD2c
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Genomic context

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See LOC107782996 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
100 current Ntab-TN90 (GCF_000715135.1) Unplaced Scaffold NW_015909212.1 (63771..67833, complement)

NW_015909212.1Genomic Context describing neighboring genes Neighboring gene enolase-like Neighboring gene transfer RNA leucine (anticodon UAA)

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015909212.1 Unplaced Scaffold Reference Ntab-TN90 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
histone deacetylase HDT1-like
Names
type 2 histone deacetylase c

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001325350.1 → NP_001312279.1  histone deacetylase HDT1-like

    Status: PROVISIONAL

    Source sequence(s)
    FJ903176
    UniProtKB/TrEMBL
    E1U7Y4
    Conserved Domains (1) summary
    cd11674
    Location:190 → 281
    lambda-1; inner capsid protein lambda-1 or VP3

RefSeqs of Annotated Genomes: Nicotiana tabacum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ntab-TN90 Primary Assembly

Genomic

  1. NW_015909212.1 Reference Ntab-TN90 Primary Assembly

    Range
    63771..67833 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016603952.1 → XP_016459438.1  histone deacetylase HDT1-like isoform X2

    UniProtKB/TrEMBL
    A0A1S3Z4W1
    Conserved Domains (1) summary
    cd11674
    Location:176 → 267
    lambda-1; inner capsid protein lambda-1 or VP3

  2. XM_016603951.1 → XP_016459437.1  histone deacetylase HDT1-like isoform X1

    UniProtKB/TrEMBL
    E1U7Y4
    Conserved Domains (1) summary
    cd11674
    Location:190 → 281
    lambda-1; inner capsid protein lambda-1 or VP3
Nucleotide Protein
Heading Accession and Version

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