U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC107278438 dof zinc finger protein 5-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 107278438, updated on 12-Jul-2024

Summary

Go to the top of the page Help
Gene symbol
LOC107278438
Gene description
dof zinc finger protein 5-like
Locus tag
OSNPB_010673700
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC107278438 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (28263770..28264297)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (27676274..27677418)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene F-box/kelch-repeat protein At3g18720 Neighboring gene ubiquitin-conjugating enzyme E2 36 Neighboring gene protein CONSERVED ONLY IN THE GREEN LINEAGE 160, chloroplastic Neighboring gene E3 ubiquitin ligase BIG BROTHER-related Neighboring gene trihelix transcription factor ENAP2

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
dof zinc finger protein 5-like
Names
DNA-binding protein Dof2-like
Dof-type zinc finger protein 19
Os01g0673700
P0007F06.34
P0485G01.24

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    28263770..28264297
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015763800.3 → XP_015619286.1  dof zinc finger protein 5-like

    UniProtKB/TrEMBL
    Q8W0I0
    Conserved Domains (1) summary
    pfam02701
    Location:83 → 127
    zf-Dof; Dof domain, zinc finger
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases