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LOC107278250 zinc finger protein ZAT1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 107278250, updated on 12-Jul-2024

Summary

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Gene symbol
LOC107278250
Gene description
zinc finger protein ZAT1
Locus tag
OSNPB_070598800
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1579_C03.27; OJ1634_B10.103
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Genomic context

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See LOC107278250 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (24663270..24665217)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (24438529..24440494)

Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene amino acid transporter AVT6A-like Neighboring gene uncharacterized LOC4343806 Neighboring gene uncharacterized LOC4343807 Neighboring gene pentatricopeptide repeat-containing protein At1g26460, mitochondrial

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
zinc finger protein ZAT1
Names
Os07g0598800
ZPT4-4 (zinc-finger protein)-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

    Range
    24663270..24665217
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015790755.3 → XP_015646241.1  zinc finger protein ZAT1

    UniProtKB/TrEMBL
    A2YND4, Q8H5B0
    Conserved Domains (3) summary
    sd00017
    Location:15 → 35
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:92 → 112
    zf-C2H2; Zinc finger, C2H2 type
    pfam13912
    Location:293 → 319
    zf-C2H2_6; C2H2-type zinc finger
Nucleotide Protein
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