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LOC107275468 WUSCHEL-related homeobox 3 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 107275468, updated on 12-Jul-2024

Summary

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Gene symbol
LOC107275468
Gene description
WUSCHEL-related homeobox 3
Locus tag
OSNPB_120101600
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC107275468 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (87320..88394)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (64269..65326)

Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9271052 Neighboring gene uncharacterized LOC136354818 Neighboring gene phototropin-1A-like Neighboring gene enoyl-[acyl-carrier-protein] reductase, mitochondrial

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in plant organ development IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
WUSCHEL-related homeobox 3
Names
Os12g0101600

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

    Range
    87320..88394
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015764120.3 → XP_015619606.1  WUSCHEL-related homeobox 3

    UniProtKB/Swiss-Prot
    A0A0P0XY78, A0AAS9, A2ZH47, Q33DK1
    UniProtKB/TrEMBL
    A0A0P0Y5V3, A0A3S6CND5, A8Y7W4
    Conserved Domains (1) summary
    cl00084
    Location:7 → 61
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Nucleotide Protein
Heading Accession and Version

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