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LOC107050029 serine/arginine repetitive matrix protein 1-like [ Gallus gallus (chicken) ]

Gene ID: 107050029, updated on 10-Oct-2024

Summary

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Symbol
LOC107050029provided by CGNC
Full Name
serine/arginine repetitive matrix protein 1-likeprovided by CGNC
Primary source
CGNC:73044
See related
Ensembl:ENSGALG00010022767
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
CACNB3
Orthologs
human mouse all
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Genomic context

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See LOC107050029 in Genome Data Viewer
Location:
chromosome: 34
Exon count:
15
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 34 NC_052565.1 (55558..65241, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 34 NC_052606.1 (11436..21475, complement)

Chromosome 34 - NC_052565.1Genomic Context describing neighboring genes Neighboring gene rho-related GTP-binding protein Rho6-like Neighboring gene probable ATP-dependent RNA helicase DDX23 Neighboring gene adenylate cyclase 6 Neighboring gene cyclin T1 Neighboring gene KAT8 regulatory NSL complex subunit 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables high voltage-gated calcium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in calcium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in chemical synaptic transmission IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neuromuscular junction development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of voltage-gated calcium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of voltage-gated calcium channel complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
voltage-dependent L-type calcium channel subunit beta-3
Names
calcium voltage-gated channel auxiliary subunit beta 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052565.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    55558..65241 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025145683.3 → XP_025001451.3  voltage-dependent L-type calcium channel subunit beta-3 isoform X2

    Related
    ENSGALP00010033518.1, ENSGALT00010055361.1

  2. XM_046904967.1 → XP_046760923.1  voltage-dependent L-type calcium channel subunit beta-3 isoform X1

  3. XM_040654805.2 → XP_040510739.1  voltage-dependent L-type calcium channel subunit beta-3 isoform X4

    UniProtKB/TrEMBL
    A0A8V0ZRR2, A0A8V0ZX99
    Related
    ENSGALP00010033505.1, ENSGALT00010055345.1
    Conserved Domains (2) summary
    cd12042
    Location:16 → 83
    SH3_CACNB3; Src Homology 3 domain of Voltage-dependent L-type calcium channel subunit beta3
    cl17190
    Location:144 → 315
    NK; Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates ...

  4. XM_025145684.3 → XP_025001452.1  voltage-dependent L-type calcium channel subunit beta-3 isoform X3

    UniProtKB/TrEMBL
    A0A3Q3AHR0, A0A8V0ZRR2
    Related
    ENSGALP00010033509.1, ENSGALT00010055351.1
    Conserved Domains (3) summary
    cd12042
    Location:55 → 122
    SH3_CACNB3; Src Homology 3 domain of Voltage-dependent L-type calcium channel subunit beta3
    pfam00625
    Location:173 → 353
    Guanylate_kin; Guanylate kinase
    pfam12052
    Location:15 → 55
    VGCC_beta4Aa_N; Voltage gated calcium channel subunit beta domain 4Aa N terminal

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052606.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    11436..21475 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040693742.2 → XP_040549676.2  voltage-dependent L-type calcium channel subunit beta-3 isoform X2

  2. XM_046934298.1 → XP_046790254.1  voltage-dependent L-type calcium channel subunit beta-3 isoform X1

  3. XM_040693745.2 → XP_040549679.1  voltage-dependent L-type calcium channel subunit beta-3 isoform X4

    UniProtKB/TrEMBL
    A0A8V0ZRR2, A0A8V0ZX99
    Conserved Domains (2) summary
    cd12042
    Location:16 → 83
    SH3_CACNB3; Src Homology 3 domain of Voltage-dependent L-type calcium channel subunit beta3
    cl17190
    Location:144 → 315
    NK; Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates ...

  4. XM_040693744.2 → XP_040549678.1  voltage-dependent L-type calcium channel subunit beta-3 isoform X3

    UniProtKB/TrEMBL
    A0A3Q3AHR0, A0A8V0ZRR2
    Conserved Domains (3) summary
    cd12042
    Location:55 → 122
    SH3_CACNB3; Src Homology 3 domain of Voltage-dependent L-type calcium channel subunit beta3
    pfam00625
    Location:173 → 353
    Guanylate_kin; Guanylate kinase
    pfam12052
    Location:15 → 55
    VGCC_beta4Aa_N; Voltage gated calcium channel subunit beta domain 4Aa N terminal
Nucleotide Protein
Heading Accession and Version

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