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TBX3 T-box transcription factor 3 [ Equus asinus (ass) ]

Gene ID: 106842207, updated on 13-Mar-2024

Summary

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Gene symbol
TBX3
Gene description
T-box transcription factor 3
See related
Ensembl:ENSEASG00005009417
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus asinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See TBX3 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
10
Annotation release Status Assembly Chr Location
101 current ASM1607732v2 (GCF_016077325.2) 8 NC_052184.1 (42710482..42732232)
100 previous assembly ASM130575v1 (GCF_001305755.1) Unplaced Scaffold NW_014638181.1 (1332205..1344922)

Chromosome 8 - NC_052184.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC123288071 Neighboring gene uncharacterized LOC123287650 Neighboring gene uncharacterized LOC123288072 Neighboring gene uncharacterized LOC123287652 Neighboring gene uncharacterized LOC123287651

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A novel A > G polymorphism in the intron 2 of TBX3 gene is significantly associated with body size in donkeys. Wang G, et al. Gene, 2021 Jun 15. PMID 33766712
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. A novel A > G polymorphism in the intron 2 of TBX3 gene is significantly associated with body size in donkeys.
    Title: A novel A > G polymorphism in the intron 2 of TBX3 gene is significantly associated with body size in donkeys.
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cardiac chamber development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell fate specification IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in central nervous system development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart looping IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of cell population proliferation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
T-box transcription factor TBX3
Names
T-box 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Equus asinus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1607732v2

Genomic

  1. NC_052184.1 Reference ASM1607732v2

    Range
    42710482..42732232
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044775818.1 → XP_044631753.1  T-box transcription factor TBX3 isoform X1

    UniProtKB/TrEMBL
    A0A8C4LNT3
    Conserved Domains (1) summary
    smart00425
    Location:104 → 310
    TBOX; Domain first found in the mice T locus (Brachyury) protein

  2. XM_044775817.1 → XP_044631752.1  T-box transcription factor TBX3 isoform X1

    UniProtKB/TrEMBL
    A0A8C4LNT3
    Related
    ENSEASP00005013495.1, ENSEAST00005014659.2
    Conserved Domains (1) summary
    smart00425
    Location:104 → 310
    TBOX; Domain first found in the mice T locus (Brachyury) protein

  3. XM_044775819.1 → XP_044631754.1  T-box transcription factor TBX3 isoform X2

    UniProtKB/TrEMBL
    A0A8C4LQ77
    Related
    ENSEASP00005013497.1, ENSEAST00005014661.2
    Conserved Domains (1) summary
    smart00425
    Location:104 → 290
    TBOX; Domain first found in the mice T locus (Brachyury) protein
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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