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LOC106432745 GATA transcription factor 20 [ Brassica napus (rape) ]

Gene ID: 106432745, updated on 30-Nov-2023

Summary

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Gene symbol
LOC106432745
Gene description
GATA transcription factor 20
Locus tag
HID58_074212
Gene type
protein coding
RefSeq status
MODEL
Organism
Brassica napus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Genomic context

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See LOC106432745 in Genome Data Viewer
Location:
chromosome: C7
Exon count:
2
Annotation release Status Assembly Chr Location
102 current Da-Ae (GCF_020379485.1) C7 NC_063450.1 (5588730..5590058)
101 previous assembly Bra_napus_v2.0 (GCF_000686985.2) C7 NC_027773.2 (2752796..2754108)

Chromosome C7 - NC_063450.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA R71 Neighboring gene uncharacterized LOC125590368 Neighboring gene uncharacterized LOC125589904 Neighboring gene uncharacterized mitochondrial protein AtMg00810-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in flower development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
GATA transcription factor 20
Names
BnaC07g03390D

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brassica napus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Da-Ae Primary Assembly

Genomic

  1. NC_063450.1 Reference Da-Ae Primary Assembly

    Range
    5588730..5590058
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013873585.3 → XP_013729039.1  GATA transcription factor 20

    UniProtKB/TrEMBL
    A0A078FFA3
    Conserved Domains (1) summary
    smart00401
    Location:88 → 134
    ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
Nucleotide Protein
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