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LOC106431082 transcription factor bHLH106 [ Brassica napus (rape) ]

Gene ID: 106431082, updated on 30-Nov-2023

Summary

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Gene symbol
LOC106431082
Gene description
transcription factor bHLH106
Locus tag
HID58_016379
Gene type
protein coding
RefSeq status
MODEL
Organism
Brassica napus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Also known as
BnabHLH324
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Genomic context

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See LOC106431082 in Genome Data Viewer
Location:
chromosome: A4
Exon count:
2
Annotation release Status Assembly Chr Location
102 current Da-Ae (GCF_020379485.1) A4 NC_063437.1 (20168029..20169723)
101 previous assembly Bra_napus_v2.0 (GCF_000686985.2) A9 NC_027765.2 (33880676..33882363, complement)

Chromosome A4 - NC_063437.1Genomic Context describing neighboring genes Neighboring gene UBP1-associated protein 2B Neighboring gene ABSCISIC ACID-INSENSITIVE 5-like protein 3 Neighboring gene uncharacterized LOC106431113 Neighboring gene CDPK-related kinase 1-like Neighboring gene amino acid transporter AVT1A Neighboring gene ferredoxin-dependent glutamate synthase 2, chloroplastic

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor bHLH106
Names
BnaA04g23710D

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brassica napus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Da-Ae Primary Assembly

Genomic

  1. NC_063437.1 Reference Da-Ae Primary Assembly

    Range
    20168029..20169723
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013871890.3 → XP_013727344.1  transcription factor bHLH106

    UniProtKB/TrEMBL
    A0A078GEW6, A0A679KN17
    Conserved Domains (2) summary
    cd04873
    Location:156 → 221
    ACT_UUR-ACR-like; ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD
    cd11455
    Location:61 → 139
    bHLH_AtAIG1_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana protein AIG1 and similar proteins
Nucleotide Protein
Heading Accession and Version

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