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LOC106428370 transcription factor DYT1-like [ Brassica napus (rape) ]

Gene ID: 106428370, updated on 30-Nov-2023

Summary

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Gene symbol
LOC106428370
Gene description
transcription factor DYT1-like
Locus tag
HID58_041299
Gene type
protein coding
RefSeq status
MODEL
Organism
Brassica napus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Genomic context

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See LOC106428370 in Genome Data Viewer
Location:
chromosome: C1
Exon count:
3
Annotation release Status Assembly Chr Location
102 current Da-Ae (GCF_020379485.1) C1 NC_063444.1 (9421589..9422554)
101 previous assembly Bra_napus_v2.0 (GCF_000686985.2) A5 NC_027761.2 (24674139..24675293, complement)

Chromosome C1 - NC_063444.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At4g21300-like Neighboring gene protein DESIGUAL 3-like Neighboring gene subtilisin-like protease SBT3.12 Neighboring gene oxygen-evolving enhancer protein 3-1, chloroplastic-like Neighboring gene pentatricopeptide repeat-containing protein At4g21300-like Neighboring gene protein DESIGUAL 3-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor DYT1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brassica napus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Da-Ae Primary Assembly

Genomic

  1. NC_063444.1 Reference Da-Ae Primary Assembly

    Range
    9421589..9422554
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013869114.3 → XP_013724568.2  transcription factor DYT1-like

    UniProtKB/TrEMBL
    A0A679KIX1
    Conserved Domains (1) summary
    cd00083
    Location:52 → 108
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
Nucleotide Protein
Heading Accession and Version

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