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LOC106422930 squamosa promoter-binding-like protein 3 [ Brassica napus (rape) ]

Gene ID: 106422930, updated on 30-Nov-2023

Summary

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Gene symbol
LOC106422930
Gene description
squamosa promoter-binding-like protein 3
Locus tag
HID58_062862
Gene type
protein coding
RefSeq status
MODEL
Organism
Brassica napus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Genomic context

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See LOC106422930 in Genome Data Viewer
Location:
chromosome: C4
Exon count:
2
Annotation release Status Assembly Chr Location
102 current Da-Ae (GCF_020379485.1) C4 NC_063447.1 (56919765..56920592)
101 previous assembly Bra_napus_v2.0 (GCF_000686985.2) C4 NC_027770.2 (63389912..63390550)

Chromosome C4 - NC_063447.1Genomic Context describing neighboring genes Neighboring gene repetitive organellar protein Neighboring gene 30S ribosomal protein S5, chloroplastic Neighboring gene mitochondrial arginine transporter BAC1 Neighboring gene transfer RNA lysine (anticodon UUU) Neighboring gene uncharacterized protein At4g28440

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in flower development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
squamosa promoter-binding-like protein 3
Names
BnaC04g44230D

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brassica napus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Da-Ae Primary Assembly

Genomic

  1. NC_063447.1 Reference Da-Ae Primary Assembly

    Range
    56919765..56920592
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013863717.3 → XP_013719171.1  squamosa promoter-binding-like protein 3

    UniProtKB/TrEMBL
    A0A078HK58, A0A078J475
    Conserved Domains (1) summary
    pfam03110
    Location:64 → 138
    SBP; SBP domain
Nucleotide Protein
Heading Accession and Version

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