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LOC106418554 transcription factor TGA6 [ Brassica napus (rape) ]

Gene ID: 106418554, updated on 30-Nov-2023

Summary

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Gene symbol
LOC106418554
Gene description
transcription factor TGA6
Locus tag
HID58_044329
Gene type
protein coding
RefSeq status
MODEL
Organism
Brassica napus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Genomic context

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See LOC106418554 in Genome Data Viewer
Location:
chromosome: C1
Exon count:
9
Annotation release Status Assembly Chr Location
102 current Da-Ae (GCF_020379485.1) C1 NC_063444.1 (47457645..47460669, complement)
101 previous assembly Bra_napus_v2.0 (GCF_000686985.2) C1 NC_027767.2 (49037665..49040600, complement)

Chromosome C1 - NC_063444.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106418453 Neighboring gene uncharacterized LOC106418452 Neighboring gene retinoblastoma-related protein 1-like Neighboring gene NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 Neighboring gene serine carboxypeptidase-like 15 Neighboring gene serine carboxypeptidase-like 15

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor TGA6
Names
BnaCnng22950D

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brassica napus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Da-Ae Primary Assembly

Genomic

  1. NC_063444.1 Reference Da-Ae Primary Assembly

    Range
    47457645..47460669 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013859280.3 → XP_013714734.1  transcription factor TGA6 isoform X2

    UniProtKB/TrEMBL
    A0A078IRY2, A0A816LD57
    Conserved Domains (3) summary
    cd14686
    Location:50 → 101
    bZIP; coiled coil [structural motif]
    pfam14144
    Location:131 → 206
    DOG1; Seed dormancy control
    cl21462
    Location:49 → 101
    bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain

  2. XM_013859278.3 → XP_013714732.1  transcription factor TGA6 isoform X1

    UniProtKB/TrEMBL
    A0A816LD57
    Conserved Domains (3) summary
    cd14686
    Location:51 → 102
    bZIP; coiled coil [structural motif]
    pfam14144
    Location:132 → 207
    DOG1; Seed dormancy control
    cl21462
    Location:50 → 102
    bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain

  3. XM_013859279.3 → XP_013714733.1  transcription factor TGA6 isoform X1

    UniProtKB/TrEMBL
    A0A816LD57
    Conserved Domains (3) summary
    cd14686
    Location:51 → 102
    bZIP; coiled coil [structural motif]
    pfam14144
    Location:132 → 207
    DOG1; Seed dormancy control
    cl21462
    Location:50 → 102
    bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain

  4. XM_013859281.3 → XP_013714735.1  transcription factor TGA6 isoform X3

    UniProtKB/TrEMBL
    A0A816LD57
    Conserved Domains (3) summary
    cd14686
    Location:19 → 70
    bZIP; coiled coil [structural motif]
    pfam14144
    Location:100 → 176
    DOG1; Seed dormancy control
    cl21462
    Location:18 → 70
    bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain
Nucleotide Protein
Heading Accession and Version

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