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LOC106412248 transcription factor bHLH70 [ Brassica napus (rape) ]

Gene ID: 106412248, updated on 30-Nov-2023

Summary

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Gene symbol
LOC106412248
Gene description
transcription factor bHLH70
Gene type
protein coding
RefSeq status
MODEL
Organism
Brassica napus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Also known as
BnabHLH185
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Genomic context

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See LOC106412248 in Genome Data Viewer
Location:
chromosome: C4
Exon count:
4
Annotation release Status Assembly Chr Location
102 current Da-Ae (GCF_020379485.1) C4 NC_063447.1 (1037540..1039594, complement)
101 previous assembly Bra_napus_v2.0 (GCF_000686985.2) C4 NC_027770.2 (1400415..1402437, complement)

Chromosome C4 - NC_063447.1Genomic Context describing neighboring genes Neighboring gene protein CCA1 Neighboring gene protein CURVATURE THYLAKOID 1B, chloroplastic Neighboring gene metal tolerance protein 1 Neighboring gene two-component response regulator-like APRR9

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor bHLH70
Names
BnaC04g00610D

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brassica napus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Da-Ae Primary Assembly

Genomic

  1. NC_063447.1 Reference Da-Ae Primary Assembly

    Range
    1037540..1039594 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013853156.3 → XP_013708610.1  transcription factor bHLH70 isoform X2

    UniProtKB/TrEMBL
    A0A078HV32, A0A679K8Y0
    Conserved Domains (1) summary
    cl00081
    Location:154 → 220
    bHLH_SF; basic Helix Loop Helix (bHLH) domain superfamily

  2. XM_013853155.3 → XP_013708609.1  transcription factor bHLH70 isoform X1

    UniProtKB/TrEMBL
    A0A679K8Y0, A0A816JC39
    Conserved Domains (1) summary
    cl00081
    Location:156 → 222
    bHLH_SF; basic Helix Loop Helix (bHLH) domain superfamily
Nucleotide Protein
Heading Accession and Version

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