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LOC106409236 GATA transcription factor 19 [ Brassica napus (rape) ]

Gene ID: 106409236, updated on 30-Nov-2023

Summary

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Gene symbol
LOC106409236
Gene description
GATA transcription factor 19
Gene type
protein coding
RefSeq status
MODEL
Organism
Brassica napus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Genomic context

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Location:
chromosome: C7
Exon count:
2
Annotation release Status Assembly Chr Location
102 current Da-Ae (GCF_020379485.1) C7 NC_063450.1 (53902351..53903783, complement)
101 previous assembly Bra_napus_v2.0 (GCF_000686985.2) C7 NC_027773.2 (59521333..59522581, complement)

Chromosome C7 - NC_063450.1Genomic Context describing neighboring genes Neighboring gene U-box domain-containing protein 5 Neighboring gene uncharacterized LOC125590187 Neighboring gene nucleolar protein 6-like Neighboring gene vacuolar sorting protein 39

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in flower development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
GATA transcription factor 19
Names
BnaC07g46090D

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brassica napus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Da-Ae Primary Assembly

Genomic

  1. NC_063450.1 Reference Da-Ae Primary Assembly

    Range
    53902351..53903783 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013849896.3 → XP_013705350.1  GATA transcription factor 19

    UniProtKB/TrEMBL
    A0A816NIB1
    Conserved Domains (1) summary
    smart00401
    Location:80 → 118
    ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
Nucleotide Protein
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