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LOC106402384 myb family transcription factor APL [ Brassica napus (rape) ]

Gene ID: 106402384, updated on 30-Nov-2023

Summary

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Gene symbol
LOC106402384
Gene description
myb family transcription factor APL
Locus tag
HID58_071814
Gene type
protein coding
RefSeq status
MODEL
Organism
Brassica napus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Genomic context

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See LOC106402384 in Genome Data Viewer
Location:
chromosome: C6
Exon count:
6
Annotation release Status Assembly Chr Location
102 current Da-Ae (GCF_020379485.1) C6 NC_063449.1 (31253617..31255476)
101 previous assembly Bra_napus_v2.0 (GCF_000686985.2) C6 NC_027772.2 (28514620..28516431)

Chromosome C6 - NC_063449.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At1g79490, mitochondrial Neighboring gene ALA-interacting subunit 5 Neighboring gene uncharacterized LOC106403802 Neighboring gene small nucleolar RNA R71

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
myb family transcription factor APL
Names
BnaC06g19840D

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brassica napus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Da-Ae Primary Assembly

Genomic

  1. NC_063449.1 Reference Da-Ae Primary Assembly

    Range
    31253617..31255476
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013843100.3 → XP_013698554.1  myb family transcription factor APL

    UniProtKB/TrEMBL
    A0A816QDM5, A0A816YXR3
    Conserved Domains (2) summary
    TIGR01557
    Location:34 → 90
    myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
    pfam14379
    Location:130 → 169
    Myb_CC_LHEQLE; MYB-CC type transfactor, LHEQLE motif
Nucleotide Protein
Heading Accession and Version

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