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LOC106399526 dehydration-responsive element-binding protein 1F [ Brassica napus (rape) ]

Gene ID: 106399526, updated on 30-Nov-2023

Summary

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Gene symbol
LOC106399526
Gene description
dehydration-responsive element-binding protein 1F
Gene type
protein coding
RefSeq status
MODEL
Organism
Brassica napus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Genomic context

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See LOC106399526 in Genome Data Viewer
Location:
chromosome: A9
Exon count:
1
Annotation release Status Assembly Chr Location
102 current Da-Ae (GCF_020379485.1) A9 NC_063442.1 (42279288..42280316)
101 previous assembly Bra_napus_v2.0 (GCF_000686985.2) A9 NC_027765.2 (42814848..42815833)

Chromosome A9 - NC_063442.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC125578597 Neighboring gene ribosomal RNA processing protein 36 homolog Neighboring gene calcium-dependent protein kinase 26 Neighboring gene transfer RNA glycine (anticodon UCC)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
dehydration-responsive element-binding protein 1F
Names
BnaA09g47030D

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brassica napus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Da-Ae Primary Assembly

Genomic

  1. NC_063442.1 Reference Da-Ae Primary Assembly

    Range
    42279288..42280316
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013840001.3 → XP_013695455.1  dehydration-responsive element-binding protein 1F

    UniProtKB/TrEMBL
    A0A078GMZ3
    Conserved Domains (1) summary
    cd00018
    Location:31 → 89
    AP2; DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein). In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor ...
Nucleotide Protein
Heading Accession and Version

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