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LOC106387893 dehydration-responsive element-binding protein 1B [ Brassica napus (rape) ]

Gene ID: 106387893, updated on 30-Nov-2023

Summary

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Gene symbol
LOC106387893
Gene description
dehydration-responsive element-binding protein 1B
Locus tag
HID58_009541
Gene type
protein coding
RefSeq status
MODEL
Organism
Brassica napus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Also known as
CBF; DREB2-2
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Genomic context

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See LOC106387893 in Genome Data Viewer
Location:
chromosome: A3
Exon count:
1
Annotation release Status Assembly Chr Location
102 current Da-Ae (GCF_020379485.1) A3 NC_063436.1 (7106193..7107531)
101 previous assembly Bra_napus_v2.0 (GCF_000686985.2) A3 NC_027759.2 (10063742..10064797)

Chromosome A3 - NC_063436.1Genomic Context describing neighboring genes Neighboring gene internal alternative NAD(P)H-ubiquinone oxidoreductase A2, mitochondrial Neighboring gene PHD finger-like domain-containing protein 5A Neighboring gene uncharacterized LOC125603288 Neighboring gene MADS-box protein FLOWERING LOCUS C Neighboring gene probable protein phosphatase 2C 25

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
dehydration-responsive element-binding protein 1B
Names
BnaA03g13620D
DREB2-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brassica napus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Da-Ae Primary Assembly

Genomic

  1. NC_063436.1 Reference Da-Ae Primary Assembly

    Range
    7106193..7107531
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013827830.3 → XP_013683284.1  dehydration-responsive element-binding protein 1B

    UniProtKB/TrEMBL
    A0A078JEI6, Q6SZ76
    Conserved Domains (1) summary
    cd00018
    Location:48 → 108
    AP2; DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein). In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor ...
Nucleotide Protein
Heading Accession and Version

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