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LOC106386447 transcription factor PRE3 [ Brassica napus (rape) ]

Gene ID: 106386447, updated on 30-Nov-2023

Summary

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Gene symbol
LOC106386447
Gene description
transcription factor PRE3
Locus tag
HID58_072073
Gene type
protein coding
RefSeq status
MODEL
Organism
Brassica napus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Also known as
BnabHLH263; BnabHLH399
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Genomic context

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See LOC106386447 in Genome Data Viewer
Location:
chromosome: C6
Exon count:
2
Annotation release Status Assembly Chr Location
102 current Da-Ae (GCF_020379485.1) C6 NC_063449.1 (33901890..33902662)
101 previous assembly Bra_napus_v2.0 (GCF_000686985.2) C4 NC_027770.2 (17709717..17710420, complement)

Chromosome C6 - NC_063449.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111210950 Neighboring gene F-box/kelch-repeat protein At1g74510 Neighboring gene probable serine/threonine-protein kinase PBL3 Neighboring gene GDSL esterase/lipase At1g74460

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of growth IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor PRE3
Names
BnaA07g22200D

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brassica napus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Da-Ae Primary Assembly

Genomic

  1. NC_063449.1 Reference Da-Ae Primary Assembly

    Range
    33901890..33902662
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013826300.3 → XP_013681754.1  transcription factor PRE3

    UniProtKB/TrEMBL
    A0A679KIT2, A0A679KPG5
    Conserved Domains (1) summary
    PLN03217
    Location:1 → 92
    PLN03217; transcription factor ATBS1; Provisional
Nucleotide Protein
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