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LOC106381237 B3 domain-containing transcription factor VRN1 [ Brassica napus (rape) ]

Gene ID: 106381237, updated on 30-Nov-2023

Summary

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Gene symbol
LOC106381237
Gene description
B3 domain-containing transcription factor VRN1
Locus tag
HID58_054026
Gene type
protein coding
RefSeq status
MODEL
Organism
Brassica napus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Genomic context

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See LOC106381237 in Genome Data Viewer
Location:
chromosome: C3
Exon count:
4
Annotation release Status Assembly Chr Location
102 current Da-Ae (GCF_020379485.1) C3 NC_063446.1 (29647802..29650349, complement)
101 previous assembly Bra_napus_v2.0 (GCF_000686985.2) C3 NC_027769.2 (40889860..40892435, complement)

Chromosome C3 - NC_063446.1Genomic Context describing neighboring genes Neighboring gene protein JINGUBANG Neighboring gene B3 domain-containing protein REM9-like Neighboring gene protein DMR6-LIKE OXYGENASE 1-like Neighboring gene uncharacterized LOC125584534

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
B3 domain-containing transcription factor VRN1
Names
BnaC03g40730D

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brassica napus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Da-Ae Primary Assembly

Genomic

  1. NC_063446.1 Reference Da-Ae Primary Assembly

    Range
    29647802..29650349 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013821127.3 → XP_013676581.1  B3 domain-containing transcription factor VRN1

    UniProtKB/TrEMBL
    A0A078GCA6, A0A816S5N7
    Conserved Domains (2) summary
    cd10017
    Location:5 → 98
    B3_DNA; Plant-specific B3-DNA binding domain
    pfam02362
    Location:230 → 324
    B3; B3 DNA binding domain
Nucleotide Protein
Heading Accession and Version

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