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LOC106361331 MADS-box protein AGL71 [ Brassica napus (rape) ]

Gene ID: 106361331, updated on 10-Oct-2024

Summary

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Gene symbol
LOC106361331
Gene description
MADS-box protein AGL71
Locus tag
HID58_030085
Gene type
protein coding
RefSeq status
MODEL
Organism
Brassica napus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Genomic context

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See LOC106361331 in Genome Data Viewer
Location:
chromosome: A8
Exon count:
6
Annotation release Status Assembly Chr Location
102 current Da-Ae (GCF_020379485.1) A8 NC_063441.1 (15779132..15782410)
101 previous assembly Bra_napus_v2.0 (GCF_000686985.2) A8 NC_027764.2 (18118889..18121801)

Chromosome A8 - NC_063441.1Genomic Context describing neighboring genes Neighboring gene ABC transporter B family member 28 Neighboring gene transfer RNA lysine (anticodon CUU) Neighboring gene uncharacterized LOC106359883 Neighboring gene transcription factor bHLH126-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
MADS-box protein AGL71
Names
BnaA08g30890D

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brassica napus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Da-Ae Primary Assembly

Genomic

  1. NC_063441.1 Reference Da-Ae Primary Assembly

    Range
    15779132..15782410
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013801061.3 → XP_013656515.1  MADS-box protein AGL71

    UniProtKB/TrEMBL
    A0A078ISC4, A0A817A0N7
    Conserved Domains (2) summary
    cd00265
    Location:3 → 68
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
    pfam01486
    Location:88 → 176
    K-box; K-box region

  2. XM_048737769.1 → XP_048593726.1  MADS-box protein AGL71

    UniProtKB/TrEMBL
    A0A078ISC4
Nucleotide Protein
Heading Accession and Version

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