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LOC106347748 transcription factor HHO6 [ Brassica napus (rape) ]

Gene ID: 106347748, updated on 30-Nov-2023

Summary

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Gene symbol
LOC106347748
Gene description
transcription factor HHO6
Locus tag
HID58_069678
Gene type
protein coding
RefSeq status
MODEL
Organism
Brassica napus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Genomic context

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See LOC106347748 in Genome Data Viewer
Location:
chromosome: C6
Exon count:
5
Annotation release Status Assembly Chr Location
102 current Da-Ae (GCF_020379485.1) C6 NC_063449.1 (5803018..5804848)
101 previous assembly Bra_napus_v2.0 (GCF_000686985.2) C6 NC_027772.2 (18280747..18282661)

Chromosome C6 - NC_063449.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC125588297 Neighboring gene uncharacterized LOC106350147 Neighboring gene protein ALP1-like Neighboring gene methylthioribose kinase Neighboring gene transcription factor bHLH95-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor HHO6
Names
BnaCnng72430D

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brassica napus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Da-Ae Primary Assembly

Genomic

  1. NC_063449.1 Reference Da-Ae Primary Assembly

    Range
    5803018..5804848
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013787340.3 → XP_013642794.1  transcription factor HHO6

    UniProtKB/TrEMBL
    A0A078K0B0
    Conserved Domains (1) summary
    TIGR01557
    Location:193 → 248
    myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
Nucleotide Protein
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