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LOC106347039 protein SAWADEE HOMEODOMAIN HOMOLOG 2 [ Brassica napus (rape) ]

Gene ID: 106347039, updated on 30-Nov-2023

Summary

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Gene symbol
LOC106347039
Gene description
protein SAWADEE HOMEODOMAIN HOMOLOG 2
Locus tag
HID58_003081
Gene type
protein coding
RefSeq status
MODEL
Organism
Brassica napus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Genomic context

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See LOC106347039 in Genome Data Viewer
Location:
chromosome: A1
Exon count:
9
Annotation release Status Assembly Chr Location
102 current Da-Ae (GCF_020379485.1) A1 NC_063434.1 (24809905..24812352)
101 previous assembly Bra_napus_v2.0 (GCF_000686985.2) A1 NC_027757.2 (27973609..27976028)

Chromosome A1 - NC_063434.1Genomic Context describing neighboring genes Neighboring gene NAC domain-containing protein 100-like Neighboring gene CRM-domain containing factor CFM3, chloroplastic/mitochondrial Neighboring gene VQ motif-containing protein 20-like Neighboring gene uncharacterized LOC106347077 Neighboring gene uncharacterized LOC106379991

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables chromatin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein SAWADEE HOMEODOMAIN HOMOLOG 2
Names
BnaA01g26780D

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brassica napus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Da-Ae Primary Assembly

Genomic

  1. NC_063434.1 Reference Da-Ae Primary Assembly

    Range
    24809905..24812352
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013786527.3 → XP_013641981.1  protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1

    UniProtKB/TrEMBL
    A0A816Y1E4
    Conserved Domains (2) summary
    smart00389
    Location:13 → 75
    HOX; Homeodomain
    pfam16719
    Location:139 → 268
    SAWADEE; SAWADEE domain

  2. XM_013786533.3 → XP_013641987.1  protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X2

    Conserved Domains (2) summary
    smart00389
    Location:13 → 75
    HOX; Homeodomain
    pfam16719
    Location:139 → 267
    SAWADEE; SAWADEE domain

  3. XM_013786542.2 → XP_013641996.1  protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X3

    UniProtKB/TrEMBL
    A0A078G0K4
    Conserved Domains (2) summary
    smart00389
    Location:13 → 75
    HOX; Homeodomain
    pfam16719
    Location:137 → 266
    SAWADEE; SAWADEE domain

  4. XM_048738366.1 → XP_048594323.1  protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X4

Nucleotide Protein
Heading Accession and Version

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