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LOC105966210 zinc finger protein CONSTANS-LIKE 16-like [ Erythranthe guttata (spotted monkey flower) ]

Gene ID: 105966210, updated on 22-Oct-2023

Summary

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Gene symbol
LOC105966210
Gene description
zinc finger protein CONSTANS-LIKE 16-like
Locus tag
MIMGU_mgv1a007591mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Erythranthe guttata
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Genomic context

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See LOC105966210 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
100 current Mimgu1_0 (GCF_000504015.1) Unplaced Scaffold NW_012193768.1 (199365..201021)

NW_012193768.1Genomic Context describing neighboring genes Neighboring gene homocysteine S-methyltransferase 1 Neighboring gene protein FLX-like 3 Neighboring gene LOB domain-containing protein 42-like Neighboring gene uncharacterized LOC105966060

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012193768.1 Unplaced Scaffold Reference Mimgu1_0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein CONSTANS-LIKE 16-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Erythranthe guttata Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mimgu1_0 Primary Assembly

Genomic

  1. NW_012193768.1 Reference Mimgu1_0 Primary Assembly

    Range
    199365..201021
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012990776.1 → XP_012846230.1  zinc finger protein CONSTANS-LIKE 16-like

    See identical proteins and their annotated locations for XP_012846230.1

    UniProtKB/TrEMBL
    A0A022QRT9
    Conserved Domains (2) summary
    cd00021
    Location:17 → 61
    BBOX; B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
    pfam06203
    Location:347 → 389
    CCT; CCT motif
Nucleotide Protein
Heading Accession and Version

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