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LOC105958754 transcription factor bHLH139-like [ Erythranthe guttata (spotted monkey flower) ]

Gene ID: 105958754, updated on 22-Oct-2023

Summary

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Gene symbol
LOC105958754
Gene description
transcription factor bHLH139-like
Locus tag
MIMGU_mgv1a025380mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Erythranthe guttata
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Genomic context

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See LOC105958754 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
100 current Mimgu1_0 (GCF_000504015.1) Unplaced Scaffold NW_012193250.1 (2328878..2330489)

NW_012193250.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein ZAT10 Neighboring gene adenine phosphoribosyltransferase 1-like Neighboring gene activating signal cointegrator 1 complex subunit 2 Neighboring gene interferon-related developmental regulator 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012193250.1 Unplaced Scaffold Reference Mimgu1_0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor bHLH139-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Erythranthe guttata Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mimgu1_0 Primary Assembly

Genomic

  1. NW_012193250.1 Reference Mimgu1_0 Primary Assembly

    Range
    2328878..2330489
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012982758.1 → XP_012838212.1  transcription factor bHLH139-like

    See identical proteins and their annotated locations for XP_012838212.1

    UniProtKB/TrEMBL
    A0A022R8Q5
    Conserved Domains (1) summary
    cd00083
    Location:253 → 298
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
Nucleotide Protein
Heading Accession and Version

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