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LOC105803831 homeobox-leucine zipper protein ATHB-40 [ Gossypium raimondii (Peruvian cotton) ]

Gene ID: 105803831, updated on 23-Nov-2023

Summary

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Gene symbol
LOC105803831
Gene description
homeobox-leucine zipper protein ATHB-40
Locus tag
B456_007G206000
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium raimondii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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See LOC105803831 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
3
Annotation release Status Assembly Chr Location
101 current ASM2569854v1 (GCF_025698545.1) 11 NC_068575.1 (42224747..42226329)
100 previous assembly Graimondii2_0 (GCF_000327365.1) 7 NC_026935.1 (21357048..21358648, complement)

Chromosome 11 - NC_068575.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105803835 Neighboring gene probable NAD(P)H dehydrogenase (quinone) FQR1-like 2 Neighboring gene uncharacterized LOC105803833 Neighboring gene serine/threonine/tyrosine-protein kinase HT1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox-leucine zipper protein ATHB-40

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gossypium raimondii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2569854v1 Primary Assembly

Genomic

  1. NC_068575.1 Reference ASM2569854v1 Primary Assembly

    Range
    42224747..42226329
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012636243.2 → XP_012491697.1  homeobox-leucine zipper protein ATHB-40

    See identical proteins and their annotated locations for XP_012491697.1

    UniProtKB/TrEMBL
    A0A0D2TIR8
    Conserved Domains (1) summary
    pfam00046
    Location:61 → 114
    Homeobox; Homeobox domain
Nucleotide Protein
Heading Accession and Version

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