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LOC105803325 transcription factor bHLH62 [ Gossypium raimondii (Peruvian cotton) ]

Gene ID: 105803325, updated on 23-Nov-2023

Summary

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Gene symbol
LOC105803325
Gene description
transcription factor bHLH62
Locus tag
B456_007G157700
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium raimondii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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See LOC105803325 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
8
Annotation release Status Assembly Chr Location
101 current ASM2569854v1 (GCF_025698545.1) 11 NC_068575.1 (49832513..49835502)
100 previous assembly Graimondii2_0 (GCF_000327365.1) 7 NC_026935.1 (13761259..13764274, complement)

Chromosome 11 - NC_068575.1Genomic Context describing neighboring genes Neighboring gene U-box domain-containing protein 9 Neighboring gene uncharacterized LOC105803326 Neighboring gene peptidyl-prolyl cis-trans isomerase FKBP62 Neighboring gene peptidyl-prolyl cis-trans isomerase FKBP15-1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor bHLH62

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gossypium raimondii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2569854v1 Primary Assembly

Genomic

  1. NC_068575.1 Reference ASM2569854v1 Primary Assembly

    Range
    49832513..49835502
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012635449.2 → XP_012490903.1  transcription factor bHLH62

    See identical proteins and their annotated locations for XP_012490903.1

    UniProtKB/TrEMBL
    A0A0D2P9Z8, A0A0D2SKX5
    Conserved Domains (1) summary
    smart00353
    Location:352 → 401
    HLH; helix loop helix domain
Nucleotide Protein
Heading Accession and Version

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