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LOC105802401 transcription factor ICE1 [ Gossypium raimondii (Peruvian cotton) ]

Gene ID: 105802401, updated on 23-Nov-2023

Summary

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Gene symbol
LOC105802401
Gene description
transcription factor ICE1
Locus tag
B456_007G072600
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium raimondii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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See LOC105802401 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
4
Annotation release Status Assembly Chr Location
101 current ASM2569854v1 (GCF_025698545.1) 11 NC_068575.1 (58041134..58045177, complement)
100 previous assembly Graimondii2_0 (GCF_000327365.1) 7 NC_026935.1 (5154611..5158756)

Chromosome 11 - NC_068575.1Genomic Context describing neighboring genes Neighboring gene disease resistance protein RFL1-like Neighboring gene light-regulated protein 1, chloroplastic Neighboring gene V-type proton ATPase subunit C Neighboring gene protein AUXIN SIGNALING F-BOX 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor ICE1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gossypium raimondii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2569854v1 Primary Assembly

Genomic

  1. NC_068575.1 Reference ASM2569854v1 Primary Assembly

    Range
    58041134..58045177 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012634010.2 → XP_012489464.1  transcription factor ICE1

    See identical proteins and their annotated locations for XP_012489464.1

    UniProtKB/TrEMBL
    A0A0D2S8J1, A0A0D2TAJ0
    Conserved Domains (2) summary
    cd04873
    Location:449 → 513
    ACT_UUR-ACR-like; ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD
    smart00353
    Location:336 → 380
    HLH; helix loop helix domain
Nucleotide Protein
Heading Accession and Version

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