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LOC105800814 lysine-specific demethylase REF6 [ Gossypium raimondii (Peruvian cotton) ]

Gene ID: 105800814, updated on 23-Nov-2023

Summary

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Gene symbol
LOC105800814
Gene description
lysine-specific demethylase REF6
Locus tag
B456_006G270100
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium raimondii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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See LOC105800814 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
7
Annotation release Status Assembly Chr Location
101 current ASM2569854v1 (GCF_025698545.1) 9 NC_068573.1 (49660462..49668573)
100 previous assembly Graimondii2_0 (GCF_000327365.1) 6 NC_026934.1 (50763216..50771308)

Chromosome 9 - NC_068573.1Genomic Context describing neighboring genes Neighboring gene autophagy-related protein 16 Neighboring gene CBBY-like protein Neighboring gene uncharacterized LOC105800816 Neighboring gene 26S proteasome non-ATPase regulatory subunit 6 homolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone H3K4me/H3K4me2/H3K4me3 demethylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lysine-specific demethylase REF6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gossypium raimondii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2569854v1 Primary Assembly

Genomic

  1. NC_068573.1 Reference ASM2569854v1 Primary Assembly

    Range
    49660462..49668573
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012632159.2 → XP_012487613.1  lysine-specific demethylase REF6

    See identical proteins and their annotated locations for XP_012487613.1

    UniProtKB/TrEMBL
    A0A0D2S311
    Conserved Domains (5) summary
    pfam02373
    Location:232 → 351
    JmjC; JmjC domain, hydroxylase
    TIGR02794
    Location:1346 → 1495
    tolA_full; TolA protein
    sd00017
    Location:1515 → 1537
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam02375
    Location:25 → 58
    JmjN; jmjN domain
    cl00146
    Location:1327 → 1459
    TFIIS_I; N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
Nucleotide Protein
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