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LOC105799845 transcription factor MYB3R-3 [ Gossypium raimondii (Peruvian cotton) ]

Gene ID: 105799845, updated on 23-Nov-2023

Summary

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Gene symbol
LOC105799845
Gene description
transcription factor MYB3R-3
Locus tag
B456_006G172800
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium raimondii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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See LOC105799845 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
8
Annotation release Status Assembly Chr Location
101 current ASM2569854v1 (GCF_025698545.1) 9 NC_068573.1 (42061753..42065281, complement)
100 previous assembly Graimondii2_0 (GCF_000327365.1) 6 NC_026934.1 (43198797..43202328, complement)

Chromosome 9 - NC_068573.1Genomic Context describing neighboring genes Neighboring gene receptor-like cytoplasmic kinase 176 Neighboring gene E3 ubiquitin-protein ligase PRT6 Neighboring gene uncharacterized LOC128032468 Neighboring gene transfer RNA lysine (anticodon CUU) Neighboring gene probable protein phosphatase 2C 23

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor MYB3R-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gossypium raimondii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2569854v1 Primary Assembly

Genomic

  1. NC_068573.1 Reference ASM2569854v1 Primary Assembly

    Range
    42061753..42065281 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012630618.2 → XP_012486072.1  transcription factor MYB3R-3

    See identical proteins and their annotated locations for XP_012486072.1

    UniProtKB/TrEMBL
    A0A0D2QBQ2
    Conserved Domains (2) summary
    smart00717
    Location:111 → 159
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    pfam00249
    Location:111 → 157
    Myb_DNA-binding; Myb-like DNA-binding domain
Nucleotide Protein
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