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LOC105799322 transcription factor GAMYB [ Gossypium raimondii (Peruvian cotton) ]

Gene ID: 105799322, updated on 11-Feb-2023

Summary

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Gene symbol
LOC105799322
Gene description
transcription factor GAMYB
Locus tag
B456_006G121900
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium raimondii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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See LOC105799322 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
5
Annotation release Status Assembly Chr Location
101 current ASM2569854v1 (GCF_025698545.1) 9 NC_068573.1 (36115919..36124016)
100 previous assembly Graimondii2_0 (GCF_000327365.1) 6 NC_026934.1 (37292310..37300419)

Chromosome 9 - NC_068573.1Genomic Context describing neighboring genes Neighboring gene vacuolar protein sorting-associated protein 26A Neighboring gene protein NRT1/ PTR FAMILY 5.7 Neighboring gene uncharacterized LOC128032439 Neighboring gene uncharacterized LOC128032597

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
transcription factor GAMYB

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gossypium raimondii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2569854v1 Primary Assembly

Genomic

  1. NC_068573.1 Reference ASM2569854v1 Primary Assembly

    Range
    36115919..36124016
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012629819.2 → XP_012485273.1  transcription factor GAMYB

    See identical proteins and their annotated locations for XP_012485273.1

    UniProtKB/TrEMBL
    A0A0D2RUT7
    Conserved Domains (2) summary
    smart00717
    Location:28 → 77
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    pfam00249
    Location:28 → 75
    Myb_DNA-binding; Myb-like DNA-binding domain

  2. XM_012629818.2 → XP_012485272.1  transcription factor GAMYB

    See identical proteins and their annotated locations for XP_012485272.1

    UniProtKB/TrEMBL
    A0A0D2RUT7
    Conserved Domains (2) summary
    smart00717
    Location:28 → 77
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    pfam00249
    Location:28 → 75
    Myb_DNA-binding; Myb-like DNA-binding domain
Nucleotide Protein
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