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LOC105799141 protein SENSITIVE TO PROTON RHIZOTOXICITY 2 [ Gossypium raimondii (Peruvian cotton) ]

Gene ID: 105799141, updated on 23-Nov-2023

Summary

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Gene symbol
LOC105799141
Gene description
protein SENSITIVE TO PROTON RHIZOTOXICITY 2
Locus tag
B456_006G104700
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium raimondii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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See LOC105799141 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
1
Annotation release Status Assembly Chr Location
101 current ASM2569854v1 (GCF_025698545.1) 9 NC_068573.1 (33529829..33531266, complement)
100 previous assembly Graimondii2_0 (GCF_000327365.1) 6 NC_026934.1 (34708819..34710156, complement)

Chromosome 9 - NC_068573.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105797653 Neighboring gene histone H2B Neighboring gene transfer RNA valine (anticodon UAC) Neighboring gene zinc finger protein ZAT5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in response to acidic pH IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to aluminum ion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein SENSITIVE TO PROTON RHIZOTOXICITY 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gossypium raimondii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2569854v1 Primary Assembly

Genomic

  1. NC_068573.1 Reference ASM2569854v1 Primary Assembly

    Range
    33529829..33531266 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012629542.2 → XP_012484996.1  protein SENSITIVE TO PROTON RHIZOTOXICITY 2

    See identical proteins and their annotated locations for XP_012484996.1

    UniProtKB/TrEMBL
    A0A0D2Q758, A0A7J8PEH1
    Conserved Domains (2) summary
    sd00017
    Location:317 → 337
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:220 → 242
    zf-C2H2; Zinc finger, C2H2 type
Nucleotide Protein
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