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LOC105795168 telomere repeat-binding factor 1 [ Gossypium raimondii (Peruvian cotton) ]

Gene ID: 105795168, updated on 23-Nov-2023

Summary

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Gene symbol
LOC105795168
Gene description
telomere repeat-binding factor 1
Locus tag
B456_005G230800
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium raimondii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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See LOC105795168 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
7
Annotation release Status Assembly Chr Location
101 current ASM2569854v1 (GCF_025698545.1) 3 NC_068567.1 (60254051..60257892)
100 previous assembly Graimondii2_0 (GCF_000327365.1) 5 NC_026933.1 (61340469..61344343)

Chromosome 3 - NC_068567.1Genomic Context describing neighboring genes Neighboring gene nucleobase-ascorbate transporter 4 Neighboring gene cysteine-rich and transmembrane domain-containing protein WIH2 Neighboring gene LIM domain-containing protein WLIM1 Neighboring gene transfer RNA proline (anticodon CGG)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables double-stranded telomeric DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nucleosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of nucleosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
telomere repeat-binding factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gossypium raimondii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2569854v1 Primary Assembly

Genomic

  1. NC_068567.1 Reference ASM2569854v1 Primary Assembly

    Range
    60254051..60257892
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012624673.2 → XP_012480127.1  telomere repeat-binding factor 1

    See identical proteins and their annotated locations for XP_012480127.1

    UniProtKB/TrEMBL
    A0A0D2SM51, A0A7J8PBV0
    Conserved Domains (2) summary
    smart00526
    Location:118 → 181
    H15; Domain in histone families 1 and 5
    cd11660
    Location:6 → 56
    SANT_TRF; Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family

  2. XM_012624672.2 → XP_012480126.1  telomere repeat-binding factor 1

    See identical proteins and their annotated locations for XP_012480126.1

    UniProtKB/TrEMBL
    A0A0D2SM51, A0A7J8PBV0
    Conserved Domains (2) summary
    smart00526
    Location:118 → 181
    H15; Domain in histone families 1 and 5
    cd11660
    Location:6 → 56
    SANT_TRF; Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family
Nucleotide Protein
Heading Accession and Version

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