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LOC105794699 zinc finger protein 5 [ Gossypium raimondii (Peruvian cotton) ]

Gene ID: 105794699, updated on 23-Nov-2023

Summary

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Gene symbol
LOC105794699
Gene description
zinc finger protein 5
Locus tag
B456_005G186400
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium raimondii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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See LOC105794699 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
1
Annotation release Status Assembly Chr Location
101 current ASM2569854v1 (GCF_025698545.1) 3 NC_068567.1 (53489689..53492044, complement)
100 previous assembly Graimondii2_0 (GCF_000327365.1) 5 NC_026933.1 (54513140..54514763, complement)

Chromosome 3 - NC_068567.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105794698 Neighboring gene chaperone protein dnaJ 16 Neighboring gene protein JINGUBANG Neighboring gene non-functional NADPH-dependent codeinone reductase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription cis-regulatory region binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cytokinin-activated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in gibberellic acid mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in trichome differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in trichome morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gossypium raimondii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2569854v1 Primary Assembly

Genomic

  1. NC_068567.1 Reference ASM2569854v1 Primary Assembly

    Range
    53489689..53492044 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012623992.2 → XP_012479446.1  zinc finger protein 5

    See identical proteins and their annotated locations for XP_012479446.1

    UniProtKB/TrEMBL
    A0A0D2RHM9
    Conserved Domains (1) summary
    pfam13912
    Location:74 → 99
    zf-C2H2_6; C2H2-type zinc finger
Nucleotide Protein
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