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LOC105790399 NAC domain-containing protein 54 [ Gossypium raimondii (Peruvian cotton) ]

Gene ID: 105790399, updated on 23-Nov-2023

Summary

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Gene symbol
LOC105790399
Gene description
NAC domain-containing protein 54
Locus tag
B456_004G048200
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium raimondii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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See LOC105790399 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
6
Annotation release Status Assembly Chr Location
101 current ASM2569854v1 (GCF_025698545.1) 8 NC_068572.1 (4325089..4329314, complement)
100 previous assembly Graimondii2_0 (GCF_000327365.1) 4 NC_026932.1 (4339214..4343450, complement)

Chromosome 8 - NC_068572.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105793078 Neighboring gene trans-cinnamate:CoA ligase, peroxisomal Neighboring gene uncharacterized LOC105790405 Neighboring gene UTP--glucose-1-phosphate uridylyltransferase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
NAC domain-containing protein 54

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gossypium raimondii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2569854v1 Primary Assembly

Genomic

  1. NC_068572.1 Reference ASM2569854v1 Primary Assembly

    Range
    4325089..4329314 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012617974.2 → XP_012473428.1  NAC domain-containing protein 54

    See identical proteins and their annotated locations for XP_012473428.1

    UniProtKB/TrEMBL
    A0A0D2RTJ8
    Conserved Domains (1) summary
    pfam02365
    Location:9 → 50
    NAM; No apical meristem (NAM) protein
Nucleotide Protein
Heading Accession and Version

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