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LOC105789779 transcription factor bHLH18 [ Gossypium raimondii (Peruvian cotton) ]

Gene ID: 105789779, updated on 23-Nov-2023

Summary

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Gene symbol
LOC105789779
Gene description
transcription factor bHLH18
Locus tag
B456_003G034700
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium raimondii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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Location:
chromosome: 2
Exon count:
5
Annotation release Status Assembly Chr Location
101 current ASM2569854v1 (GCF_025698545.1) 2 NC_068566.1 (3419615..3421818, complement)
100 previous assembly Graimondii2_0 (GCF_000327365.1) 3 NC_026931.1 (3521340..3523520, complement)

Chromosome 2 - NC_068566.1Genomic Context describing neighboring genes Neighboring gene leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 Neighboring gene transcription factor bHLH18 Neighboring gene probable sphingolipid transporter spinster homolog 2 Neighboring gene uncharacterized LOC105787727

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor bHLH18

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gossypium raimondii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2569854v1 Primary Assembly

Genomic

  1. NC_068566.1 Reference ASM2569854v1 Primary Assembly

    Range
    3419615..3421818 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012617137.2 → XP_012472591.1  transcription factor bHLH18

    See identical proteins and their annotated locations for XP_012472591.1

    UniProtKB/TrEMBL
    A0A0D2MIV4, A0A7J8NYE6
    Conserved Domains (2) summary
    smart00353
    Location:184 → 231
    HLH; helix loop helix domain
    pfam04629
    Location:224 → 278
    ICA69; Islet cell autoantigen ICA69, C-terminal domain
Nucleotide Protein
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