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LOC105788879 zinc finger protein ZAT12 [ Gossypium raimondii (Peruvian cotton) ]

Gene ID: 105788879, updated on 23-Nov-2023

Summary

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Gene symbol
LOC105788879
Gene description
zinc finger protein ZAT12
Locus tag
B456_003G136200
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium raimondii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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See LOC105788879 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
1
Annotation release Status Assembly Chr Location
101 current ASM2569854v1 (GCF_025698545.1) 2 NC_068566.1 (42106141..42106855, complement)
100 previous assembly Graimondii2_0 (GCF_000327365.1) 3 NC_026931.1 (39490471..39491216, complement)

Chromosome 2 - NC_068566.1Genomic Context describing neighboring genes Neighboring gene histone H2B Neighboring gene 40S ribosomal protein S15a-1 Neighboring gene protein ALP1-like Neighboring gene transfer RNA tyrosine (anticodon GUA)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in response to chitin IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to stress IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein ZAT12

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gossypium raimondii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2569854v1 Primary Assembly

Genomic

  1. NC_068566.1 Reference ASM2569854v1 Primary Assembly

    Range
    42106141..42106855 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012615945.2 → XP_012471399.1  zinc finger protein ZAT12

    See identical proteins and their annotated locations for XP_012471399.1

    UniProtKB/TrEMBL
    A0A0D2RM65, A0A7J8P033
    Conserved Domains (2) summary
    sd00017
    Location:35 → 55
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13912
    Location:32 → 58
    zf-C2H2_6; C2H2-type zinc finger
Nucleotide Protein
Heading Accession and Version

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