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LOC105786078 zinc finger transcription factor YY1 [ Gossypium raimondii (Peruvian cotton) ]

Gene ID: 105786078, updated on 23-Nov-2023

Summary

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Gene symbol
LOC105786078
Gene description
zinc finger transcription factor YY1
Locus tag
B456_002G214700
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium raimondii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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See LOC105786078 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
7
Annotation release Status Assembly Chr Location
101 current ASM2569854v1 (GCF_025698545.1) 1 NC_068565.1 (45940868..45944142, complement)
100 previous assembly Graimondii2_0 (GCF_000327365.1) 2 NC_026930.1 (56361310..56364571, complement)

Chromosome 1 - NC_068565.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105786077 Neighboring gene uncharacterized LOC105786079 Neighboring gene serine/threonine-protein kinase-like protein At5g23170 Neighboring gene nudix hydrolase 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of PcG protein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger transcription factor YY1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gossypium raimondii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2569854v1 Primary Assembly

Genomic

  1. NC_068565.1 Reference ASM2569854v1 Primary Assembly

    Range
    45940868..45944142 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012612347.2 → XP_012467801.1  zinc finger transcription factor YY1

    See identical proteins and their annotated locations for XP_012467801.1

    UniProtKB/TrEMBL
    A0A0D2ME52, A0A0D2NR21
    Conserved Domains (2) summary
    COG5048
    Location:77 → 195
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:82 → 101
    ZF_C2H2; C2H2 Zn finger [structural motif]

  2. XM_012612344.2 → XP_012467798.1  zinc finger transcription factor YY1

    See identical proteins and their annotated locations for XP_012467798.1

    UniProtKB/TrEMBL
    A0A0D2ME52, A0A0D2NR21
    Conserved Domains (2) summary
    COG5048
    Location:77 → 195
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:82 → 101
    ZF_C2H2; C2H2 Zn finger [structural motif]

  3. XM_012612348.2 → XP_012467802.1  zinc finger transcription factor YY1

    See identical proteins and their annotated locations for XP_012467802.1

    UniProtKB/TrEMBL
    A0A0D2ME52, A0A0D2NR21
    Conserved Domains (2) summary
    COG5048
    Location:77 → 195
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:82 → 101
    ZF_C2H2; C2H2 Zn finger [structural motif]

  4. XM_012612345.2 → XP_012467799.1  zinc finger transcription factor YY1

    See identical proteins and their annotated locations for XP_012467799.1

    UniProtKB/TrEMBL
    A0A0D2ME52, A0A0D2NR21
    Conserved Domains (2) summary
    COG5048
    Location:77 → 195
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:82 → 101
    ZF_C2H2; C2H2 Zn finger [structural motif]
Nucleotide Protein
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