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LOC105785796 transcription factor bHLH137 [ Gossypium raimondii (Peruvian cotton) ]

Gene ID: 105785796, updated on 23-Nov-2023

Summary

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Gene symbol
LOC105785796
Gene description
transcription factor bHLH137
Locus tag
B456_001G054900
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium raimondii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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See LOC105785796 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
8
Annotation release Status Assembly Chr Location
101 current ASM2569854v1 (GCF_025698545.1) 7 NC_068571.1 (48215937..48219499, complement)
100 previous assembly Graimondii2_0 (GCF_000327365.1) 1 NC_026929.1 (5284903..5288447)

Chromosome 7 - NC_068571.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105785813 Neighboring gene sialyltransferase-like protein 4 Neighboring gene serine/threonine-protein phosphatase 7 long form homolog Neighboring gene mitochondrial phosphate carrier protein 3, mitochondrial

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor bHLH137

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gossypium raimondii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2569854v1 Primary Assembly

Genomic

  1. NC_068571.1 Reference ASM2569854v1 Primary Assembly

    Range
    48215937..48219499 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012611961.2 → XP_012467415.1  transcription factor bHLH137

    See identical proteins and their annotated locations for XP_012467415.1

    UniProtKB/TrEMBL
    A0A0D2N5U5
    Conserved Domains (1) summary
    smart00353
    Location:133 → 182
    HLH; helix loop helix domain
Nucleotide Protein
Heading Accession and Version

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