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LOC105784519 transcription factor bHLH95 [ Gossypium raimondii (Peruvian cotton) ]

Gene ID: 105784519, updated on 23-Nov-2023

Summary

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Gene symbol
LOC105784519
Gene description
transcription factor bHLH95
Locus tag
B456_013G045100
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium raimondii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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See LOC105784519 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
3
Annotation release Status Assembly Chr Location
101 current ASM2569854v1 (GCF_025698545.1) 13 NC_068577.1 (4005514..4008521, complement)
100 previous assembly Graimondii2_0 (GCF_000327365.1) 13 NC_026941.1 (3950413..3953481, complement)

Chromosome 13 - NC_068577.1Genomic Context describing neighboring genes Neighboring gene PI-PLC X domain-containing protein At5g67130 Neighboring gene U-box domain-containing protein 26 Neighboring gene E3 ubiquitin-protein ligase MBR2 Neighboring gene caffeoyl-CoA O-methyltransferase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endosperm development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor bHLH95

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gossypium raimondii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2569854v1 Primary Assembly

Genomic

  1. NC_068577.1 Reference ASM2569854v1 Primary Assembly

    Range
    4005514..4008521 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012610422.2 → XP_012465876.1  transcription factor bHLH95 isoform X1

    See identical proteins and their annotated locations for XP_012465876.1

    UniProtKB/TrEMBL
    A0A0D2VAJ0
    Conserved Domains (2) summary
    cd04873
    Location:189 → 232
    ACT_UUR-ACR-like; ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD
    cd11393
    Location:60 → 113
    bHLH_AtbHLH_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana genes coding transcription factors and similar proteins

  2. XM_012610424.2 → XP_012465878.1  transcription factor bHLH95 isoform X2

    See identical proteins and their annotated locations for XP_012465878.1

    UniProtKB/TrEMBL
    A0A0D2TUS9
    Conserved Domains (2) summary
    cd04873
    Location:189 → 232
    ACT_UUR-ACR-like; ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD
    cd11393
    Location:60 → 113
    bHLH_AtbHLH_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana genes coding transcription factors and similar proteins
Nucleotide Protein
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