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LOC105783010 protein SAWADEE HOMEODOMAIN HOMOLOG 2 [ Gossypium raimondii (Peruvian cotton) ]

Gene ID: 105783010, updated on 23-Nov-2023

Summary

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Gene symbol
LOC105783010
Gene description
protein SAWADEE HOMEODOMAIN HOMOLOG 2
Locus tag
B456_013G172000
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium raimondii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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See LOC105783010 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
9
Annotation release Status Assembly Chr Location
101 current ASM2569854v1 (GCF_025698545.1) 13 NC_068577.1 (46920443..46923350, complement)
100 previous assembly Graimondii2_0 (GCF_000327365.1) 13 NC_026941.1 (45846489..45849415, complement)

Chromosome 13 - NC_068577.1Genomic Context describing neighboring genes Neighboring gene carbamoyl-phosphate synthase large chain, chloroplastic-like Neighboring gene uncharacterized LOC105782331 Neighboring gene uncharacterized LOC105783011 Neighboring gene uncharacterized LOC105784065

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables chromatin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein SAWADEE HOMEODOMAIN HOMOLOG 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gossypium raimondii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2569854v1 Primary Assembly

Genomic

  1. NC_068577.1 Reference ASM2569854v1 Primary Assembly

    Range
    46920443..46923350 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012608160.2 → XP_012463614.1  protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X2

    See identical proteins and their annotated locations for XP_012463614.1

    UniProtKB/TrEMBL
    A0A0D2VGR8, A0A0D2W6Z9
    Conserved Domains (2) summary
    smart00389
    Location:13 → 75
    HOX; Homeodomain
    pfam16719
    Location:130 → 258
    SAWADEE; SAWADEE domain

  2. XM_012608158.2 → XP_012463612.1  protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1

    See identical proteins and their annotated locations for XP_012463612.1

    UniProtKB/TrEMBL
    A0A0D2SFQ9, A0A0D2U2Z9
    Conserved Domains (2) summary
    smart00389
    Location:13 → 75
    HOX; Homeodomain
    pfam16719
    Location:132 → 260
    SAWADEE; SAWADEE domain
Nucleotide Protein
Heading Accession and Version

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