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LOC105782793 transcription factor TCP21 [ Gossypium raimondii (Peruvian cotton) ]

Gene ID: 105782793, updated on 23-Nov-2023

Summary

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Gene symbol
LOC105782793
Gene description
transcription factor TCP21
Locus tag
B456_013G068600
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium raimondii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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See LOC105782793 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
1
Annotation release Status Assembly Chr Location
101 current ASM2569854v1 (GCF_025698545.1) 13 NC_068577.1 (7848219..7850326, complement)
100 previous assembly Graimondii2_0 (GCF_000327365.1) 13 NC_026941.1 (7948566..7951303, complement)

Chromosome 13 - NC_068577.1Genomic Context describing neighboring genes Neighboring gene transfer RNA threonine (anticodon UGU) Neighboring gene uncharacterized LOC105784075 Neighboring gene uncharacterized LOC105782858 Neighboring gene E3 ubiquitin-protein ligase RING1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Paterson AH, et al. Nature, 2012 Dec 20. PMID 23257886
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of circadian rhythm IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor TCP21

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gossypium raimondii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2569854v1 Primary Assembly

Genomic

  1. NC_068577.1 Reference ASM2569854v1 Primary Assembly

    Range
    7848219..7850326 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012607785.2 → XP_012463239.1  transcription factor TCP21

    See identical proteins and their annotated locations for XP_012463239.1

    UniProtKB/TrEMBL
    A0A0D2VBM4, A0A7J8QLT0
    Conserved Domains (1) summary
    cl23822
    Location:32 → 106
    TCP; TCP family transcription factor
Nucleotide Protein
Heading Accession and Version

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