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LOC105781162 transcription factor MYB101 [ Gossypium raimondii (Peruvian cotton) ]

Gene ID: 105781162, updated on 23-Nov-2023

Summary

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Gene symbol
LOC105781162
Gene description
transcription factor MYB101
Locus tag
B456_013G106600
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium raimondii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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See LOC105781162 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
2
Annotation release Status Assembly Chr Location
101 current ASM2569854v1 (GCF_025698545.1) 2 NC_068566.1 (17660084..17661476, complement)
100 previous assembly Graimondii2_0 (GCF_000327365.1) 13 NC_026941.1 (22968307..22969952)

Chromosome 2 - NC_068566.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105784143 Neighboring gene uncharacterized LOC105784261 Neighboring gene uncharacterized LOC128033856 Neighboring gene uncharacterized LOC105781081

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor MYB101

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gossypium raimondii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2569854v1 Primary Assembly

Genomic

  1. NC_068566.1 Reference ASM2569854v1 Primary Assembly

    Range
    17660084..17661476 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012605720.2 → XP_012461174.1  transcription factor MYB101

    See identical proteins and their annotated locations for XP_012461174.1

    UniProtKB/TrEMBL
    A0A0D2VC19
    Conserved Domains (2) summary
    smart00717
    Location:26 → 74
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    pfam00249
    Location:26 → 72
    Myb_DNA-binding; Myb-like DNA-binding domain
Nucleotide Protein
Heading Accession and Version

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