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LOC105779902 transcription factor SRM1 [ Gossypium raimondii (Peruvian cotton) ]

Gene ID: 105779902, updated on 23-Nov-2023

Summary

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Gene symbol
LOC105779902
Gene description
transcription factor SRM1
Locus tag
B456_012G135600
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium raimondii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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See LOC105779902 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
6
Annotation release Status Assembly Chr Location
101 current ASM2569854v1 (GCF_025698545.1) 4 NC_068568.1 (4540395..4544431)
100 previous assembly Graimondii2_0 (GCF_000327365.1) 12 NC_026940.1 (30883730..30887869, complement)

Chromosome 4 - NC_068568.1Genomic Context describing neighboring genes Neighboring gene probable protein arginine N-methyltransferase 6 Neighboring gene mitochondrial import receptor subunit TOM40-1 Neighboring gene uncharacterized LOC105780338 Neighboring gene FAD synthetase 2, chloroplastic

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor SRM1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gossypium raimondii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2569854v1 Primary Assembly

Genomic

  1. NC_068568.1 Reference ASM2569854v1 Primary Assembly

    Range
    4540395..4544431
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_052629295.1 → XP_052485255.1  transcription factor SRM1

    UniProtKB/TrEMBL
    A0A0D2VZ46

  2. XM_012603888.2 → XP_012459342.1  transcription factor SRM1

    See identical proteins and their annotated locations for XP_012459342.1

    UniProtKB/TrEMBL
    A0A0D2VZ46
    Conserved Domains (3) summary
    TIGR01557
    Location:115 → 167
    myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
    smart00717
    Location:119 → 166
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    cd00167
    Location:11 → 57
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

  3. XM_012603883.2 → XP_012459337.1  transcription factor SRM1

    See identical proteins and their annotated locations for XP_012459337.1

    UniProtKB/TrEMBL
    A0A0D2VZ46
    Conserved Domains (3) summary
    TIGR01557
    Location:115 → 167
    myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
    smart00717
    Location:119 → 166
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    cd00167
    Location:11 → 57
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

  4. XM_012603894.2 → XP_012459348.1  transcription factor SRM1

    See identical proteins and their annotated locations for XP_012459348.1

    UniProtKB/TrEMBL
    A0A0D2VZ46
    Conserved Domains (3) summary
    TIGR01557
    Location:115 → 167
    myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
    smart00717
    Location:119 → 166
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    cd00167
    Location:11 → 57
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

  5. XM_012603884.1 → XP_012459338.1  transcription factor SRM1

    See identical proteins and their annotated locations for XP_012459338.1

    UniProtKB/TrEMBL
    A0A0D2VZ46
    Conserved Domains (3) summary
    TIGR01557
    Location:115 → 167
    myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
    smart00717
    Location:119 → 166
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    cd00167
    Location:11 → 57
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
Nucleotide Protein
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