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LOC105778845 transcription factor bHLH25 [ Gossypium raimondii (Peruvian cotton) ]

Gene ID: 105778845, updated on 23-Nov-2023

Summary

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Gene symbol
LOC105778845
Gene description
transcription factor bHLH25
Locus tag
B456_012G161900
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium raimondii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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See LOC105778845 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
5
Annotation release Status Assembly Chr Location
101 current ASM2569854v1 (GCF_025698545.1) 4 NC_068568.1 (2028188..2030014, complement)
100 previous assembly Graimondii2_0 (GCF_000327365.1) 12 NC_026940.1 (33380752..33382599)

Chromosome 4 - NC_068568.1Genomic Context describing neighboring genes Neighboring gene squalene monooxygenase SE2 Neighboring gene receptor-like protein kinase 7 Neighboring gene transcription factor bHLH25 Neighboring gene soluble inorganic pyrophosphatase 6, chloroplastic Neighboring gene eugenol synthase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor bHLH25

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gossypium raimondii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2569854v1 Primary Assembly

Genomic

  1. NC_068568.1 Reference ASM2569854v1 Primary Assembly

    Range
    2028188..2030014 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012602603.2 → XP_012458057.1  transcription factor bHLH25

    See identical proteins and their annotated locations for XP_012458057.1

    UniProtKB/TrEMBL
    A0A0D2V775
    Conserved Domains (1) summary
    smart00353
    Location:127 → 175
    HLH; helix loop helix domain
Nucleotide Protein
Heading Accession and Version

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