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LOC105777326 transcription factor bHLH104 [ Gossypium raimondii (Peruvian cotton) ]

Gene ID: 105777326, updated on 23-Nov-2023

Summary

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Gene symbol
LOC105777326
Gene description
transcription factor bHLH104
Locus tag
B456_011G172500
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium raimondii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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See LOC105777326 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
5
Annotation release Status Assembly Chr Location
101 current ASM2569854v1 (GCF_025698545.1) 10 NC_068574.1 (38241282..38243929, complement)
100 previous assembly Graimondii2_0 (GCF_000327365.1) 11 NC_026939.1 (38641197..38643945, complement)

Chromosome 10 - NC_068574.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105778298 Neighboring gene uncharacterized LOC105777327 Neighboring gene leucine-rich repeat extensin-like protein 6 Neighboring gene ethylene-responsive transcription factor ERF098

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular iron ion homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor bHLH104

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gossypium raimondii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2569854v1 Primary Assembly

Genomic

  1. NC_068574.1 Reference ASM2569854v1 Primary Assembly

    Range
    38241282..38243929 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012600541.2 → XP_012455995.1  transcription factor bHLH104 isoform X2

    See identical proteins and their annotated locations for XP_012455995.1

    UniProtKB/TrEMBL
    A0A0D2UUC4, A0A0D2VNC0
    Conserved Domains (2) summary
    smart00353
    Location:65 → 114
    HLH; helix loop helix domain
    cl11531
    Location:101 → 157
    DUF904; Protein of unknown function (DUF904)

  2. XM_012600540.2 → XP_012455994.1  transcription factor bHLH104 isoform X1

    See identical proteins and their annotated locations for XP_012455994.1

    UniProtKB/TrEMBL
    A0A0D2T9D9, A0A0D2VNC0
    Conserved Domains (2) summary
    smart00353
    Location:66 → 115
    HLH; helix loop helix domain
    cl11531
    Location:102 → 158
    DUF904; Protein of unknown function (DUF904)
Nucleotide Protein
Heading Accession and Version

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