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LOC105777152 BES1/BZR1 homolog protein 4 [ Gossypium raimondii (Peruvian cotton) ]

Gene ID: 105777152, updated on 23-Nov-2023

Summary

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Gene symbol
LOC105777152
Gene description
BES1/BZR1 homolog protein 4
Locus tag
B456_002G052400
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium raimondii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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See LOC105777152 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
4
Annotation release Status Assembly Chr Location
101 current ASM2569854v1 (GCF_025698545.1) 1 NC_068565.1 (4680795..4684690)
100 previous assembly Graimondii2_0 (GCF_000327365.1) 2 NC_026930.1 (4601362..4605301)

Chromosome 1 - NC_068565.1Genomic Context describing neighboring genes Neighboring gene LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.1 Neighboring gene LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.1 Neighboring gene hypothetical protein Neighboring gene receptor-like protein 34

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Paterson AH, et al. Nature, 2012 Dec 20. PMID 23257886
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in brassinosteroid mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
BES1/BZR1 homolog protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gossypium raimondii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2569854v1 Primary Assembly

Genomic

  1. NC_068565.1 Reference ASM2569854v1 Primary Assembly

    Range
    4680795..4684690
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012600264.2 → XP_012455718.1  BES1/BZR1 homolog protein 4 isoform X2

    See identical proteins and their annotated locations for XP_012455718.1

    UniProtKB/TrEMBL
    A0A0D2NIJ8
    Conserved Domains (1) summary
    pfam05687
    Location:31 → 102
    BES1_N; BES1/BZR1 plant transcription factor, N-terminal

  2. XM_012600247.2 → XP_012455701.1  BES1/BZR1 homolog protein 4 isoform X1

    See identical proteins and their annotated locations for XP_012455701.1

    UniProtKB/TrEMBL
    A0A0D2NIJ8
    Conserved Domains (1) summary
    pfam05687
    Location:31 → 102
    BES1_N; BES1/BZR1 plant transcription factor, N-terminal

RNA

  1. XR_001128202.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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