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LOC105776836 transcription factor bHLH153 [ Gossypium raimondii (Peruvian cotton) ]

Gene ID: 105776836, updated on 23-Nov-2023

Summary

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Gene symbol
LOC105776836
Gene description
transcription factor bHLH153
Locus tag
B456_011G135700
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium raimondii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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See LOC105776836 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
6
Annotation release Status Assembly Chr Location
101 current ASM2569854v1 (GCF_025698545.1) 10 NC_068574.1 (20585325..20589238, complement)
100 previous assembly Graimondii2_0 (GCF_000327365.1) 11 NC_026939.1 (20583310..20587188, complement)

Chromosome 10 - NC_068574.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105777992 Neighboring gene BAG-associated GRAM protein 1 Neighboring gene small nucleolar RNA R71 Neighboring gene F-box/kelch-repeat protein At3g06240

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor bHLH153

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gossypium raimondii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2569854v1 Primary Assembly

Genomic

  1. NC_068574.1 Reference ASM2569854v1 Primary Assembly

    Range
    20585325..20589238 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012599766.2 → XP_012455220.1  transcription factor bHLH153 isoform X1

    See identical proteins and their annotated locations for XP_012455220.1

    UniProtKB/TrEMBL
    A0A0D2UJK1, A0A0D2VFW1
    Conserved Domains (1) summary
    cd11393
    Location:45 → 96
    bHLH_AtbHLH_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana genes coding transcription factors and similar proteins

  2. XM_012599769.2 → XP_012455223.1  transcription factor bHLH153 isoform X2

    See identical proteins and their annotated locations for XP_012455223.1

    UniProtKB/TrEMBL
    A0A0D2SZF1, A0A0D2VFW1
    Conserved Domains (1) summary
    cd11393
    Location:44 → 95
    bHLH_AtbHLH_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana genes coding transcription factors and similar proteins
Nucleotide Protein
Heading Accession and Version

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